/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011816_1894758_2
BACK
SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011816_1894758_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16490500 | 100.00 % | 8245250 | 100.00 % | 8245250 | 100.00 % |
| General Reads | 11536240 | 69.96 % | 5795262 | 70.29 % | 5740978 | 69.63 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 2 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4954258 | 30.04 % | 2449986 | 29.71 % | 2504272 | 30.37 % |
| Bisulfite_reads C2T | 5957493 | 36.13 % | 2991844 | 36.29 % | 2965649 | 35.97 % |
| Bisulfite_reads G2A | 5578749 | 33.83 % | 2803420 | 34.00 % | 2775329 | 33.66 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4420605 |
| Average Unique | 53.61 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 398316038 | 31.37 % | 166100301 | 26.16 % | 232215737 | 36.58 % |
| Base Counts Overall C | 226036388 | 17.80 % | 72939084 | 11.49 % | 153097304 | 24.11 % |
| Base Counts Overall G | 231831971 | 18.26 % | 155540740 | 24.50 % | 76291231 | 12.02 % |
| Base Counts Overall T | 396897213 | 31.26 % | 231995258 | 36.54 % | 164901955 | 25.97 % |
| Base Counts Overall N | 16686890 | 1.31 % | 8308867 | 1.31 % | 8378023 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5445456 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8245250 |
| 76 | 8245250 |
Insert Size Plot
| Insert Size Histogram |
 |