/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011817_1894759_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011817_1894759_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16241986 | 100.00 % | 8120993 | 100.00 % | 8120993 | 100.00 % |
| General Reads | 9095779 | 56.00 % | 4569961 | 56.27 % | 4525818 | 55.73 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7146201 | 44.00 % | 3551029 | 43.73 % | 3595172 | 44.27 % |
| Bisulfite_reads C2T | 4692594 | 28.89 % | 2356945 | 29.02 % | 2335649 | 28.76 % |
| Bisulfite_reads G2A | 4403191 | 27.11 % | 2213019 | 27.25 % | 2190172 | 26.97 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3518005 |
| Average Unique | 43.32 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 358664393 | 28.68 % | 164303275 | 26.28 % | 194361118 | 31.08 % |
| Base Counts Overall C | 256130267 | 20.48 % | 109136299 | 17.45 % | 146993968 | 23.51 % |
| Base Counts Overall G | 261449275 | 20.91 % | 148974666 | 23.82 % | 112474609 | 17.99 % |
| Base Counts Overall T | 357953345 | 28.62 % | 194719556 | 31.14 % | 163233789 | 26.10 % |
| Base Counts Overall N | 16435642 | 1.31 % | 8182665 | 1.31 % | 8252977 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4312838 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8120993 |
| 76 | 8120993 |
Insert Size Plot
| Insert Size Histogram |
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