/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011851_1894793_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011851_1894793_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 46332108 | 100.00 % | 23166054 | 100.00 % | 23166054 | 100.00 % |
| General Reads | 39537467 | 85.33 % | 19850079 | 85.69 % | 19687388 | 84.98 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 0 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6794639 | 14.67 % | 3315975 | 14.31 % | 3478664 | 15.02 % |
| Bisulfite_reads C2T | 20421222 | 44.08 % | 10250500 | 44.25 % | 10170722 | 43.90 % |
| Bisulfite_reads G2A | 19116247 | 41.26 % | 9599579 | 41.44 % | 9516668 | 41.08 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 15061800 |
| Average Unique | 65.02 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1217596673 | 34.13 % | 478358486 | 26.82 % | 739238187 | 41.44 % |
| Base Counts Overall C | 543506751 | 15.23 % | 106690556 | 5.98 % | 436816195 | 24.49 % |
| Base Counts Overall G | 556252282 | 15.59 % | 441857967 | 24.77 % | 114394315 | 6.41 % |
| Base Counts Overall T | 1203367971 | 33.73 % | 733547630 | 41.12 % | 469820341 | 26.34 % |
| Base Counts Overall N | 46848639 | 1.31 % | 23331519 | 1.31 % | 23517120 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 18585717 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 23166054 |
| 76 | 23166054 |
Insert Size Plot
| Insert Size Histogram |
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