/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs/EXTERNAL-K011852_1894794_2
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs LANE EXTERNAL-K011852_1894794_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 50598484 | 100.00 % | 25299242 | 100.00 % | 25299242 | 100.00 % |
| General Reads | 44201591 | 87.36 % | 22199274 | 87.75 % | 22002317 | 86.97 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 4 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6396887 | 12.64 % | 3099964 | 12.25 % | 3296923 | 13.03 % |
| Bisulfite_reads C2T | 22825079 | 45.11 % | 11460002 | 45.30 % | 11365077 | 44.92 % |
| Bisulfite_reads G2A | 21376518 | 42.25 % | 10739276 | 42.45 % | 10637242 | 42.05 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 16854684 |
| Average Unique | 66.62 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1343157448 | 34.47 % | 528113687 | 27.11 % | 815043761 | 41.84 % |
| Base Counts Overall C | 578507163 | 14.85 % | 107400053 | 5.51 % | 471107110 | 24.18 % |
| Base Counts Overall G | 593081868 | 15.22 % | 477362950 | 24.50 % | 115718918 | 5.94 % |
| Base Counts Overall T | 1330165874 | 34.14 % | 809680717 | 41.56 % | 520485157 | 26.72 % |
| Base Counts Overall N | 51170915 | 1.31 % | 25484227 | 1.31 % | 25686688 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 20774466 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 25299242 |
| 76 | 25299242 |
Insert Size Plot
| Insert Size Histogram |
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