/EXTERNAL BLUEPRINT/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs

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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	326644406	100.00 %	163322203	100.00 %	163322203	100.00 %
General Reads	257956326	78.97 %	129535112	79.31 %	128421214	78.63 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	70	0.00 %	37	0.00 %	33	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	68688010	21.03 %	33787054	20.69 %	34900956	21.37 %
Bisulfite_reads C2T	133207325	40.78 %	66874841	40.95 %	66332484	40.61 %
Bisulfite_reads G2A	124749071	38.19 %	62660308	38.37 %	62088763	38.02 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	98010064
Average Unique	60.01 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	8311794410	33.05 %	3391398667	26.97 %	4920395743	39.13 %
Base Counts Overall C	4095240147	16.28 %	1075554458	8.55 %	3019685689	24.01 %
Base Counts Overall G	4197473082	16.69 %	3061270197	24.34 %	1136202885	9.03 %
Base Counts Overall T	8216545993	32.67 %	4883001366	38.83 %	3333544627	26.51 %
Base Counts Overall N	330565630	1.31 %	164584943	1.31 %	165980687	1.32 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	120700550

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011815_1894757_2
EXTERNAL-K011817_1894759_2
EXTERNAL-K011801_1894743_2
EXTERNAL-K011811_1894753_2
EXTERNAL-K011812_1894754_2
EXTERNAL-K011813_1894755_2
EXTERNAL-K011814_1894756_2
EXTERNAL-K011816_1894758_2
EXTERNAL-K011851_1894793_2
EXTERNAL-K011818_1894760_2
EXTERNAL-K011852_1894794_2