/EXTERNAL BLUEPRINT/mapping_coverage/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs
BACK
SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
204711735 |
100% |
14558612253 |
100% |
| Mapped |
202083615 |
98.72 % |
14358875133 |
98.63 % |
| Passed |
93706218 |
45.77 % |
6122192961 |
42.05 % |
| NotPassed |
108377397 |
52.94 % |
8236682172 |
56.58 % |
| |
|
|
|
|
| LowMAPQ |
52929928 |
25.86 % |
4022674528 |
27.63 % |
| MateUnmapped |
2628120 |
1.28 % |
199737120 |
1.37 % |
| Duplicate |
53353849 |
26.06 % |
4054892524 |
27.85 % |
| BadOrientation |
12 |
0.00 % |
912 |
0.00 % |
| LargeInsertSize |
12352 |
0.01 % |
938752 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2081256 |
1.02 % |
158175456 |
1.09 % |
| Unmapped |
2628120 |
1.28 % |
199737120 |
1.37 % |
Base Level Counts
| Bases |
# |
% |
| Total |
6771401640 |
100% |
| Passed |
5606741229 |
82.80 % |
| Trimmed |
401956823 |
5.94 % |
| Clipped |
18934554 |
0.28 % |
| Overlapping |
630274125 |
9.31 % |
| LowQuality |
113494909 |
1.68 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |