/EXTERNAL BLUEPRINT/methylation/K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs
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SAMPLE K011801_K011811_K011812_K011813_K011814_K011815_K011816_K011817_K011818_K011851_K011852_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
21414528 |
465873 |
2.18 % |
| NonRefCpG |
835686 |
1421 |
0.17 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4328985 |
13.84 % |
45915 |
3.99 % |
323114 |
29.51 % |
620 |
9.25 % |
| Intermediate (0.3-0.7) |
10125933 |
32.38 % |
204954 |
17.81 % |
394017 |
35.99 % |
1479 |
22.05 % |
| Methylated (0.7-1) |
16821439 |
53.78 % |
900133 |
78.20 % |
377615 |
34.49 % |
4611 |
68.71 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.870 |
|
0.530 |
|
0.830 |
|