/EXTERNAL BLUEPRINT/mapping_coverage/K011929_K011931_K011932_K011933_K011934_5_lane_gembs
BACK
SAMPLE K011929_K011931_K011932_K011933_K011934_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
84991084 |
100% |
5926624850 |
100% |
| Mapped |
83616870 |
98.38 % |
5822184586 |
98.24 % |
| Passed |
42237379 |
49.70 % |
2677343270 |
45.17 % |
| NotPassed |
41379491 |
48.69 % |
3144841316 |
53.06 % |
| |
|
|
|
|
| LowMAPQ |
21207628 |
24.95 % |
1611779728 |
27.20 % |
| MateUnmapped |
1374214 |
1.62 % |
104440264 |
1.76 % |
| Duplicate |
19165807 |
22.55 % |
1456601332 |
24.58 % |
| BadOrientation |
2 |
0.00 % |
152 |
0.00 % |
| LargeInsertSize |
4958 |
0.01 % |
376808 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1001096 |
1.18 % |
76083296 |
1.28 % |
| Unmapped |
1374214 |
1.62 % |
104440264 |
1.76 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3000448688 |
100% |
| Passed |
2433045985 |
81.09 % |
| Trimmed |
175086956 |
5.84 % |
| Clipped |
10586702 |
0.35 % |
| Overlapping |
312518716 |
10.42 % |
| LowQuality |
69210329 |
2.31 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |