/EXTERNAL BLUEPRINT/mapping_coverage/K011856_K011920_28libs_28_lane_gembs
BACK
SAMPLE K011856_K011920_28libs_28_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
384017692 |
100% |
27891092889 |
100% |
| Mapped |
373098642 |
97.16 % |
27061245089 |
97.02 % |
| Passed |
181135253 |
47.17 % |
12472027525 |
44.72 % |
| NotPassed |
191963389 |
49.99 % |
14589217564 |
52.31 % |
| |
|
|
|
|
| LowMAPQ |
87846474 |
22.88 % |
6676332024 |
23.94 % |
| MateUnmapped |
10919050 |
2.84 % |
829847800 |
2.98 % |
| Duplicate |
99302788 |
25.86 % |
7547011888 |
27.06 % |
| BadOrientation |
8 |
0.00 % |
608 |
0.00 % |
| LargeInsertSize |
43294 |
0.01 % |
3290344 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
4770825 |
1.24 % |
362582700 |
1.30 % |
| Unmapped |
10919050 |
2.84 % |
829847800 |
2.98 % |
Base Level Counts
| Bases |
# |
% |
| Total |
13392512292 |
100% |
| Passed |
11357995132 |
84.81 % |
| Trimmed |
802297956 |
5.99 % |
| Clipped |
39149165 |
0.29 % |
| Overlapping |
881335602 |
6.58 % |
| LowQuality |
311734437 |
2.33 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |