/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs/EXTERNAL-K011880_1894822_2
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs LANE EXTERNAL-K011880_1894822_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 13084900 | 100.00 % | 6542450 | 100.00 % | 6542450 | 100.00 % |
| General Reads | 8942932 | 68.35 % | 4536519 | 69.34 % | 4406413 | 67.35 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4141968 | 31.65 % | 2005931 | 30.66 % | 2136037 | 32.65 % |
| Bisulfite_reads C2T | 4620948 | 35.32 % | 2343410 | 35.82 % | 2277538 | 34.81 % |
| Bisulfite_reads G2A | 4321984 | 33.03 % | 2193109 | 33.52 % | 2128875 | 32.54 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3440781 |
| Average Unique | 52.59 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 317788030 | 31.54 % | 130511633 | 25.91 % | 187276397 | 37.18 % |
| Base Counts Overall C | 174148709 | 17.28 % | 50853764 | 10.09 % | 123294945 | 24.47 % |
| Base Counts Overall G | 183932429 | 18.26 % | 127312906 | 25.27 % | 56619523 | 11.24 % |
| Base Counts Overall T | 318414878 | 31.60 % | 188492936 | 37.42 % | 129921942 | 25.79 % |
| Base Counts Overall N | 13253254 | 1.32 % | 6597411 | 1.31 % | 6655843 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4262826 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 6542450 |
| 76 | 6542450 |
Insert Size Plot
| Insert Size Histogram |
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