/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs/EXTERNAL-K011882_1894824_2
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs LANE EXTERNAL-K011882_1894824_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17637944 | 100.00 % | 8818972 | 100.00 % | 8818972 | 100.00 % |
| General Reads | 14721705 | 83.47 % | 7471263 | 84.72 % | 7250442 | 82.21 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2916239 | 16.53 % | 1347709 | 15.28 % | 1568530 | 17.79 % |
| Bisulfite_reads C2T | 7598986 | 43.08 % | 3855011 | 43.71 % | 3743975 | 42.45 % |
| Bisulfite_reads G2A | 7122719 | 40.38 % | 3616252 | 41.01 % | 3506467 | 39.76 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5696609 |
| Average Unique | 64.59 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 458058508 | 33.73 % | 182136907 | 26.82 % | 275921601 | 40.63 % |
| Base Counts Overall C | 204711388 | 15.07 % | 41648448 | 6.13 % | 163062940 | 24.01 % |
| Base Counts Overall G | 215700983 | 15.88 % | 167614593 | 24.68 % | 48086390 | 7.08 % |
| Base Counts Overall T | 461788555 | 34.00 % | 278768758 | 41.05 % | 183019797 | 26.95 % |
| Base Counts Overall N | 17862254 | 1.32 % | 8892138 | 1.31 % | 8970116 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7037082 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8818972 |
| 76 | 8818972 |
Insert Size Plot
| Insert Size Histogram |
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