/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs/EXTERNAL-K011884_1894826_2
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs LANE EXTERNAL-K011884_1894826_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 11373890 | 100.00 % | 5686945 | 100.00 % | 5686945 | 100.00 % |
| General Reads | 8673377 | 76.26 % | 4417104 | 77.67 % | 4256273 | 74.84 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1 | 0.00 % | 0 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 2700512 | 23.74 % | 1269841 | 22.33 % | 1430671 | 25.16 % |
| Bisulfite_reads C2T | 4469770 | 39.30 % | 2275324 | 40.01 % | 2194446 | 38.59 % |
| Bisulfite_reads G2A | 4203608 | 36.96 % | 2141780 | 37.66 % | 2061828 | 36.26 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3306165 |
| Average Unique | 58.14 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 288229404 | 32.91 % | 116478304 | 26.60 % | 171751100 | 39.22 % |
| Base Counts Overall C | 139884598 | 15.97 % | 36586956 | 8.36 % | 103297642 | 23.59 % |
| Base Counts Overall G | 147816243 | 16.88 % | 107030892 | 24.44 % | 40785351 | 9.31 % |
| Base Counts Overall T | 288343051 | 32.92 % | 172067089 | 39.29 % | 116275962 | 26.55 % |
| Base Counts Overall N | 11516234 | 1.31 % | 5731524 | 1.31 % | 5784710 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4107674 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 5686945 |
| 76 | 5686945 |
Insert Size Plot
| Insert Size Histogram |
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