/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs/EXTERNAL-K011885_1894827_2
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs LANE EXTERNAL-K011885_1894827_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17980572 | 100.00 % | 8990286 | 100.00 % | 8990286 | 100.00 % |
| General Reads | 14177367 | 78.85 % | 7200243 | 80.09 % | 6977124 | 77.61 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 16 | 0.00 % | 8 | 0.00 % | 8 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3803189 | 21.15 % | 1790035 | 19.91 % | 2013154 | 22.39 % |
| Bisulfite_reads C2T | 7385410 | 41.07 % | 3754111 | 41.76 % | 3631299 | 40.39 % |
| Bisulfite_reads G2A | 6791973 | 37.77 % | 3446140 | 38.33 % | 3345833 | 37.22 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5349221 |
| Average Unique | 59.50 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 459902375 | 33.22 % | 183075385 | 26.45 % | 276826990 | 39.99 % |
| Base Counts Overall C | 216374278 | 15.63 % | 49279529 | 7.12 % | 167094749 | 24.14 % |
| Base Counts Overall G | 228217538 | 16.48 % | 172391847 | 24.90 % | 55825691 | 8.06 % |
| Base Counts Overall T | 461800634 | 33.35 % | 278442162 | 40.22 % | 183358472 | 26.49 % |
| Base Counts Overall N | 18209219 | 1.32 % | 9063099 | 1.31 % | 9146120 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6683788 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8990286 |
| 76 | 8990286 |
Insert Size Plot
| Insert Size Histogram |
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