/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs/EXTERNAL-K011886_1894828_2
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs LANE EXTERNAL-K011886_1894828_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18491434 | 100.00 % | 9245717 | 100.00 % | 9245717 | 100.00 % |
| General Reads | 15113979 | 81.74 % | 7668447 | 82.94 % | 7445532 | 80.53 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3377455 | 18.26 % | 1577270 | 17.06 % | 1800185 | 19.47 % |
| Bisulfite_reads C2T | 7795802 | 42.16 % | 3954252 | 42.77 % | 3841550 | 41.55 % |
| Bisulfite_reads G2A | 7318177 | 39.58 % | 3714195 | 40.17 % | 3603982 | 38.98 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5840923 |
| Average Unique | 63.17 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 475819626 | 33.42 % | 190777354 | 26.80 % | 285042272 | 40.04 % |
| Base Counts Overall C | 219060140 | 15.39 % | 50969386 | 7.16 % | 168090754 | 23.61 % |
| Base Counts Overall G | 231029280 | 16.23 % | 173194642 | 24.33 % | 57834638 | 8.12 % |
| Base Counts Overall T | 479205785 | 33.66 % | 287658826 | 40.41 % | 191546959 | 26.91 % |
| Base Counts Overall N | 18725587 | 1.32 % | 9320001 | 1.31 % | 9405586 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7217300 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 9245717 |
| 76 | 9245717 |
Insert Size Plot
| Insert Size Histogram |
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