/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs/EXTERNAL-K011887_1894829_2
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs LANE EXTERNAL-K011887_1894829_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17942736 | 100.00 % | 8971368 | 100.00 % | 8971368 | 100.00 % |
| General Reads | 11367041 | 63.35 % | 5770408 | 64.32 % | 5596633 | 62.38 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1 | 0.00 % | 0 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6575694 | 36.65 % | 3200960 | 35.68 % | 3374734 | 37.62 % |
| Bisulfite_reads C2T | 5859970 | 32.66 % | 2973851 | 33.15 % | 2886119 | 32.17 % |
| Bisulfite_reads G2A | 5507072 | 30.69 % | 2796557 | 31.17 % | 2710515 | 30.21 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4349264 |
| Average Unique | 48.48 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 423675370 | 30.67 % | 182613744 | 26.44 % | 241061626 | 34.90 % |
| Base Counts Overall C | 249861355 | 18.09 % | 88420529 | 12.80 % | 161440826 | 23.37 % |
| Base Counts Overall G | 262213530 | 18.98 % | 166036937 | 24.04 % | 96176593 | 13.92 % |
| Base Counts Overall T | 427666297 | 30.95 % | 244679014 | 35.42 % | 182987283 | 26.49 % |
| Base Counts Overall N | 18174120 | 1.32 % | 9045112 | 1.31 % | 9129008 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5391578 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8971368 |
| 76 | 8971368 |
Insert Size Plot
| Insert Size Histogram |
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