/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs/EXTERNAL-K011923_1894865_2
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs LANE EXTERNAL-K011923_1894865_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 43978968 | 100.00 % | 21989484 | 100.00 % | 21989484 | 100.00 % |
| General Reads | 38609555 | 87.79 % | 19588169 | 89.08 % | 19021386 | 86.50 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 8 | 0.00 % | 4 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5369405 | 12.21 % | 2401311 | 10.92 % | 2968094 | 13.50 % |
| Bisulfite_reads C2T | 19927743 | 45.31 % | 10106087 | 45.96 % | 9821656 | 44.67 % |
| Bisulfite_reads G2A | 18681820 | 42.48 % | 9482086 | 43.12 % | 9199734 | 41.84 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 14724161 |
| Average Unique | 66.96 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1171551227 | 34.60 % | 462208330 | 27.30 % | 709342897 | 41.89 % |
| Base Counts Overall C | 486275620 | 14.36 % | 84082831 | 4.97 % | 402192789 | 23.75 % |
| Base Counts Overall G | 512523220 | 15.13 % | 413378444 | 24.41 % | 99144776 | 5.86 % |
| Base Counts Overall T | 1171498700 | 34.59 % | 711352246 | 42.01 % | 460146454 | 27.18 % |
| Base Counts Overall N | 44531769 | 1.32 % | 22168417 | 1.31 % | 22363352 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 18281694 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 21989484 |
| 76 | 21989484 |
Insert Size Plot
| Insert Size Histogram |
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