/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs/EXTERNAL-K011924_1894866_2
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs LANE EXTERNAL-K011924_1894866_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 45680066 | 100.00 % | 22840033 | 100.00 % | 22840033 | 100.00 % |
| General Reads | 34154082 | 74.77 % | 17301693 | 75.75 % | 16852389 | 73.78 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 11525984 | 25.23 % | 5538340 | 24.25 % | 5987644 | 26.22 % |
| Bisulfite_reads C2T | 17628159 | 38.59 % | 8926993 | 39.08 % | 8701166 | 38.10 % |
| Bisulfite_reads G2A | 16525923 | 36.18 % | 8374700 | 36.67 % | 8151223 | 35.69 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 13012998 |
| Average Unique | 56.97 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1190932088 | 33.86 % | 473728216 | 26.94 % | 717203872 | 40.78 % |
| Base Counts Overall C | 529168837 | 15.04 % | 121485898 | 6.91 % | 407682939 | 23.18 % |
| Base Counts Overall G | 551447453 | 15.68 % | 415297171 | 23.61 % | 136150282 | 7.74 % |
| Base Counts Overall T | 1199543160 | 34.10 % | 725136188 | 41.23 % | 474406972 | 26.98 % |
| Base Counts Overall N | 46273544 | 1.32 % | 23035068 | 1.31 % | 23238476 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 16183220 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 22840033 |
| 76 | 22840033 |
Insert Size Plot
| Insert Size Histogram |
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