/EXTERNAL BLUEPRINT/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs

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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	334052762	100.00 %	167026381	100.00 %	167026381	100.00 %
General Reads	281875806	84.38 %	142889733	85.55 %	138986073	83.21 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	41	0.00 %	17	0.00 %	24	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	52176915	15.62 %	24136631	14.45 %	28040284	16.79 %
Bisulfite_reads C2T	145622499	43.59 %	73798369	44.18 %	71824130	43.00 %
Bisulfite_reads G2A	136253348	40.79 %	69091381	41.37 %	67161967	40.21 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	107432597
Average Unique	64.32 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	8825761225	34.31 %	3487735916	27.12 %	5338025309	41.51 %
Base Counts Overall C	3782766640	14.71 %	747804581	5.81 %	3034962059	23.60 %
Base Counts Overall G	3975334760	15.45 %	3116490820	24.23 %	858843940	6.68 %
Base Counts Overall T	8799877222	34.21 %	5340591134	41.53 %	3459286088	26.90 %
Base Counts Overall N	338322827	1.32 %	168408886	1.31 %	169913941	1.32 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	133309194

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011885_1894827_2
EXTERNAL-K011880_1894822_2
EXTERNAL-K011923_1894865_2
EXTERNAL-K011887_1894829_2
EXTERNAL-K011886_1894828_2
EXTERNAL-K011881_1894823_2
EXTERNAL-K011858_1894800_2
EXTERNAL-K011924_1894866_2
EXTERNAL-K011882_1894824_2
EXTERNAL-K011883_1894825_2
EXTERNAL-K011884_1894826_2