/EXTERNAL BLUEPRINT/mapping_coverage/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs
BACK
SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
221109119 |
100% |
15790138482 |
100% |
| Mapped |
215561707 |
97.49 % |
15368535170 |
97.33 % |
| Passed |
98672891 |
44.63 % |
6484985154 |
41.07 % |
| NotPassed |
116888816 |
52.86 % |
8883550016 |
56.26 % |
| |
|
|
|
|
| LowMAPQ |
52649150 |
23.81 % |
4001335400 |
25.34 % |
| MateUnmapped |
5547412 |
2.51 % |
421603312 |
2.67 % |
| Duplicate |
60817944 |
27.51 % |
4622163744 |
29.27 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
33436 |
0.02 % |
2541136 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3388282 |
1.53 % |
257509432 |
1.63 % |
| Unmapped |
5547412 |
2.51 % |
421603312 |
2.67 % |
Base Level Counts
| Bases |
# |
% |
| Total |
7076675552 |
100% |
| Passed |
5828126753 |
82.36 % |
| Trimmed |
416840524 |
5.89 % |
| Clipped |
24336571 |
0.34 % |
| Overlapping |
567353827 |
8.02 % |
| LowQuality |
240017877 |
3.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |