/EXTERNAL BLUEPRINT/methylation/K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs
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SAMPLE K011858_K011880_K011881_K011882_K011883_K011884_K011885_K011886_K011887_K011923_K011924_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
21626162 |
460617 |
2.13 % |
| NonRefCpG |
855722 |
1543 |
0.18 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4457108 |
14.01 % |
52018 |
4.34 % |
347351 |
30.72 % |
714 |
9.88 % |
| Intermediate (0.3-0.7) |
10206086 |
32.08 % |
208353 |
17.37 % |
403863 |
35.72 % |
1528 |
21.13 % |
| Methylated (0.7-1) |
17156236 |
53.92 % |
939466 |
78.30 % |
379333 |
33.55 % |
4989 |
68.99 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.870 |
|
0.520 |
|
0.830 |
|