/EXTERNAL BLUEPRINT/K011938_K011939_2_lane_gembs

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SAMPLE K011938_K011939_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 60972628 100.00 % 30486314 100.00 % 30486314 100.00 %
General Reads 46431370 76.15 % 23305449 76.45 % 23125921 75.86 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 17 0.00 % 8 0.00 % 9 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14541241 23.85 % 7180857 23.55 % 7360384 24.14 %
Bisulfite_reads C2T 24003877 39.37 % 12046296 39.51 % 11957581 39.22 %
Bisulfite_reads G2A 22427510 36.78 % 11259161 36.93 % 11168349 36.63 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 17832868
Average Unique 58.49 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 1563223390 33.30 % 614343201 26.17 % 948880189 40.42 %
Base Counts Overall C 753253058 16.04 % 170486234 7.26 % 582766824 24.83 %
Base Counts Overall G 770742707 16.42 % 591415186 25.19 % 179327521 7.64 %
Base Counts Overall T 1545695835 32.92 % 940183923 40.05 % 605511912 25.79 %
Base Counts Overall N 61977366 1.32 % 31017634 1.32 % 30959732 1.32 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 21954047



Mapping Quality

Mapping Quality Histogram
K011938_K011939_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011938_K011939_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011939_1894881_2
EXTERNAL-K011938_1894880_2