/EXTERNAL BLUEPRINT/mapping_coverage/K011938_K011939_2_lane_gembs
BACK
SAMPLE K011938_K011939_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
36637119 |
100% |
2598455945 |
100% |
| Mapped |
36217505 |
98.85 % |
2566565281 |
98.77 % |
| Passed |
16874494 |
46.06 % |
1096496445 |
42.20 % |
| NotPassed |
19343011 |
52.80 % |
1470068836 |
56.57 % |
| |
|
|
|
|
| LowMAPQ |
9165644 |
25.02 % |
696588944 |
26.81 % |
| MateUnmapped |
419614 |
1.15 % |
31890664 |
1.23 % |
| Duplicate |
9809355 |
26.77 % |
745510980 |
28.69 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
2286 |
0.01 % |
173736 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
365726 |
1.00 % |
27795176 |
1.07 % |
| Unmapped |
419614 |
1.15 % |
31890664 |
1.23 % |
Base Level Counts
| Bases |
# |
% |
| Total |
1214937292 |
100% |
| Passed |
1004587210 |
82.69 % |
| Trimmed |
71658869 |
5.90 % |
| Clipped |
3540880 |
0.29 % |
| Overlapping |
114899967 |
9.46 % |
| LowQuality |
20250366 |
1.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |