/EXTERNAL BLUEPRINT/methylation/K011938_K011939_2_lane_gembs
BACK
SAMPLE K011938_K011939_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
8803890 |
417 |
0.00 % |
| NonRefCpG |
575041 |
4 |
0.00 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
1697653 |
17.51 % |
76 |
7.16 % |
146082 |
23.92 % |
0 |
1.50 % |
| Intermediate (0.3-0.7) |
3613319 |
37.26 % |
375 |
35.00 % |
231925 |
37.98 % |
2 |
30.65 % |
| Methylated (0.7-1) |
4386857 |
45.24 % |
620 |
57.84 % |
232704 |
38.10 % |
5 |
67.85 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.650 |
|
0.760 |
|
0.580 |
|
0.840 |
|