/EXTERNAL BLUEPRINT/mapping_coverage/K011855_K011860_K011861_K011862_K011863_K011864_K011917_K011918_8_lane_gembs
BACK
SAMPLE K011855_K011860_K011861_K011862_K011863_K011864_K011917_K011918_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
91111139 |
100% |
6400653305 |
100% |
| Mapped |
89450565 |
98.18 % |
6274449681 |
98.03 % |
| Passed |
42295955 |
46.42 % |
2690699321 |
42.04 % |
| NotPassed |
47154610 |
51.76 % |
3583750360 |
55.99 % |
| |
|
|
|
|
| LowMAPQ |
21138582 |
23.20 % |
1606532232 |
25.10 % |
| MateUnmapped |
1660574 |
1.82 % |
126203624 |
1.97 % |
| Duplicate |
24777944 |
27.20 % |
1883123744 |
29.42 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
151076 |
0.17 % |
11481776 |
0.18 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1087004 |
1.19 % |
82612304 |
1.29 % |
| Unmapped |
1660574 |
1.82 % |
126203624 |
1.97 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2895821540 |
100% |
| Passed |
2447321276 |
84.51 % |
| Trimmed |
174504767 |
6.03 % |
| Clipped |
8818216 |
0.30 % |
| Overlapping |
196304003 |
6.78 % |
| LowQuality |
68873278 |
2.38 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |