/EXTERNAL BLUEPRINT/methylation/K011859_K011888_K011889_K011890_K011891_K011892_K011893_K011925_K011926_9_lane_gembs
BACK
SAMPLE K011859_K011888_K011889_K011890_K011891_K011892_K011893_K011925_K011926_9_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
15506298 |
19139 |
0.12 % |
| NonRefCpG |
804333 |
47 |
0.01 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
2408472 |
12.44 % |
896 |
1.84 % |
222523 |
23.70 % |
28 |
9.56 % |
| Intermediate (0.3-0.7) |
6929015 |
35.78 % |
8449 |
17.36 % |
351751 |
37.47 % |
71 |
24.05 % |
| Methylated (0.7-1) |
10030712 |
51.79 % |
39314 |
80.79 % |
364445 |
38.82 % |
198 |
66.39 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.710 |
|
0.870 |
|
0.590 |
|
0.820 |
|