/EXTERNAL BLUEPRINT/mapping_coverage/K011894_K011895_K011896_K011897_K011898_K011927_K011928_7_lane_gembs
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SAMPLE K011894_K011895_K011896_K011897_K011898_K011927_K011928_7_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
80084749 |
100% |
5555507707 |
100% |
| Mapped |
78386311 |
97.88 % |
5426426419 |
97.68 % |
| Passed |
42150626 |
52.63 % |
2672514359 |
48.11 % |
| NotPassed |
36235685 |
45.25 % |
2753912060 |
49.57 % |
| |
|
|
|
|
| LowMAPQ |
18177318 |
22.70 % |
1381476168 |
24.87 % |
| MateUnmapped |
1698438 |
2.12 % |
129081288 |
2.32 % |
| Duplicate |
16974473 |
21.20 % |
1290059948 |
23.22 % |
| BadOrientation |
2 |
0.00 % |
152 |
0.00 % |
| LargeInsertSize |
59088 |
0.07 % |
4490688 |
0.08 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1024804 |
1.28 % |
77885104 |
1.40 % |
| Unmapped |
1698438 |
2.12 % |
129081288 |
2.32 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2896401420 |
100% |
| Passed |
2431133213 |
83.94 % |
| Trimmed |
173938817 |
6.01 % |
| Clipped |
8834037 |
0.31 % |
| Overlapping |
215053024 |
7.42 % |
| LowQuality |
67442329 |
2.33 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |