/EXTERNAL BLUEPRINT/methylation/K011894_K011895_K011896_K011897_K011898_K011927_K011928_7_lane_gembs
BACK
SAMPLE K011894_K011895_K011896_K011897_K011898_K011927_K011928_7_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
14850195 |
7819 |
0.05 % |
| NonRefCpG |
777514 |
16 |
0.00 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
2273200 |
12.46 % |
368 |
1.82 % |
197033 |
21.97 % |
4 |
4.03 % |
| Intermediate (0.3-0.7) |
6627526 |
36.32 % |
3707 |
18.27 % |
339145 |
37.82 % |
28 |
25.09 % |
| Methylated (0.7-1) |
9344690 |
51.22 % |
16220 |
79.92 % |
360545 |
40.21 % |
80 |
70.87 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.700 |
|
0.870 |
|
0.610 |
|
0.830 |
|