/EXTERNAL BLUEPRINT/K011940_K011941_K011942_K011943_K011946_5_lane_gembs

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SAMPLE K011940_K011941_K011942_K011943_K011946_5_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 107870550 100.00 % 53935275 100.00 % 53935275 100.00 %
General Reads 87542487 81.16 % 44208297 81.97 % 43334190 80.34 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11 0.00 % 8 0.00 % 3 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20328052 18.84 % 9726970 18.03 % 10601082 19.66 %
Bisulfite_reads C2T 45160319 41.87 % 22800639 42.27 % 22359680 41.46 %
Bisulfite_reads G2A 42382179 39.29 % 21407666 39.69 % 20974513 38.89 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 34062260
Average Unique 63.15 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2623279388 32.00 % 1133995198 27.66 % 1489284190 36.33 %
Base Counts Overall C 1387802117 16.93 % 455646629 11.12 % 932155488 22.74 %
Base Counts Overall G 1448302229 17.67 % 955986614 23.32 % 492315615 12.01 %
Base Counts Overall T 2626163294 32.03 % 1498857216 36.57 % 1127306078 27.50 %
Base Counts Overall N 112614772 1.37 % 54595243 1.33 % 58019529 1.42 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 42183856



Mapping Quality

Mapping Quality Histogram
K011940_K011941_K011942_K011943_K011946_5_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011940_K011941_K011942_K011943_K011946_5_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011946_1894888_2
EXTERNAL-K011940_1894882_2
EXTERNAL-K011942_1894884_2
EXTERNAL-K011941_1894883_2
EXTERNAL-K011943_1894885_2