/EXTERNAL BLUEPRINT/K011944_K011945_K011947_3_lane_gembs

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SAMPLE K011944_K011945_K011947_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 82852214 100.00 % 41426107 100.00 % 41426107 100.00 %
General Reads 56050919 67.65 % 28248323 68.19 % 27802596 67.11 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 370 0.00 % 188 0.00 % 182 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26800925 32.35 % 13177596 31.81 % 13623329 32.89 %
Bisulfite_reads C2T 28843984 34.81 % 14532458 35.08 % 14311526 34.55 %
Bisulfite_reads G2A 27207305 32.84 % 13716053 33.11 % 13491252 32.57 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 21692537
Average Unique 52.36 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 1932572077 30.29 % 856108845 26.84 % 1076463232 33.75 %
Base Counts Overall C 1203262571 18.86 % 447122778 14.02 % 756139793 23.70 %
Base Counts Overall G 1238716465 19.42 % 774384593 24.28 % 464331872 14.56 %
Base Counts Overall T 1921820575 30.12 % 1070587064 33.56 % 851233511 26.69 %
Base Counts Overall N 83248790 1.30 % 41606959 1.30 % 41641831 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate -0.03839113132666109
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 26684732



Mapping Quality

Mapping Quality Histogram
K011944_K011945_K011947_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011944_K011945_K011947_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011944_1894886_2
EXTERNAL-K011945_1894887_2
EXTERNAL-K011947_1894889_2