/EXTERNAL BLUEPRINT/mapping_coverage/K011944_K011945_K011947_3_lane_gembs
BACK
SAMPLE K011944_K011945_K011947_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
46156363 |
100% |
3219799023 |
100% |
| Mapped |
45349758 |
98.25 % |
3158497043 |
98.10 % |
| Passed |
24493651 |
53.07 % |
1573432911 |
48.87 % |
| NotPassed |
20856107 |
45.19 % |
1585064132 |
49.23 % |
| |
|
|
|
|
| LowMAPQ |
10394438 |
22.52 % |
789977288 |
24.53 % |
| MateUnmapped |
806605 |
1.75 % |
61301980 |
1.90 % |
| Duplicate |
9905971 |
21.46 % |
752853796 |
23.38 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
8638 |
0.02 % |
656488 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
547060 |
1.19 % |
41576560 |
1.29 % |
| Unmapped |
806605 |
1.75 % |
61301980 |
1.90 % |
Base Level Counts
| Bases |
# |
% |
| Total |
1714755776 |
100% |
| Passed |
1440040200 |
83.98 % |
| Trimmed |
101442897 |
5.92 % |
| Clipped |
4848180 |
0.28 % |
| Overlapping |
136474685 |
7.96 % |
| LowQuality |
31949814 |
1.86 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |