/EXTERNAL BLUEPRINT/mapping_coverage/K011956_K011957_K011958_K011959_K011960_K011961_K011962_K011963_8_lane_gembs
BACK
SAMPLE K011956_K011957_K011958_K011959_K011960_K011961_K011962_K011963_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
90729381 |
100% |
6555299574 |
100% |
| Mapped |
89034865 |
98.13 % |
6426516358 |
98.04 % |
| Passed |
27972808 |
30.83 % |
1785800026 |
27.24 % |
| NotPassed |
61062057 |
67.30 % |
4640716332 |
70.79 % |
| |
|
|
|
|
| LowMAPQ |
23290262 |
25.67 % |
1770059912 |
27.00 % |
| MateUnmapped |
1694516 |
1.87 % |
128783216 |
1.96 % |
| Duplicate |
36614650 |
40.36 % |
2782713400 |
42.45 % |
| BadOrientation |
2 |
0.00 % |
152 |
0.00 % |
| LargeInsertSize |
27716 |
0.03 % |
2106416 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1129427 |
1.24 % |
85836452 |
1.31 % |
| Unmapped |
1694516 |
1.87 % |
128783216 |
1.96 % |
Base Level Counts
| Bases |
# |
% |
| Total |
1944051880 |
100% |
| Passed |
1634352885 |
84.07 % |
| Trimmed |
115528381 |
5.94 % |
| Clipped |
5972878 |
0.31 % |
| Overlapping |
152278976 |
7.83 % |
| LowQuality |
35918760 |
1.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |