/EXTERNAL BLUEPRINT/methylation/K011956_K011957_K011958_K011959_K011960_K011961_K011962_K011963_8_lane_gembs
BACK
SAMPLE K011956_K011957_K011958_K011959_K011960_K011961_K011962_K011963_8_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
11631348 |
2440 |
0.02 % |
| NonRefCpG |
693065 |
11 |
0.00 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
2225611 |
16.66 % |
240 |
3.74 % |
172368 |
22.69 % |
9 |
15.02 % |
| Intermediate (0.3-0.7) |
4951716 |
37.07 % |
1344 |
20.89 % |
287148 |
37.80 % |
17 |
26.70 % |
| Methylated (0.7-1) |
6179095 |
46.26 % |
4851 |
75.37 % |
300220 |
39.52 % |
38 |
58.29 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.660 |
|
0.860 |
|
0.600 |
|
0.770 |
|