/EXTERNAL BLUEPRINT/mapping_coverage/K011964_K011965_K011966_K011967_K011968_K011969_K011970_7_lane_gembs
BACK
SAMPLE K011964_K011965_K011966_K011967_K011968_K011969_K011970_7_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
126527240 |
100% |
9094036076 |
100% |
| Mapped |
124589379 |
98.47 % |
8946758640 |
98.38 % |
| Passed |
41253763 |
32.60 % |
2613251824 |
28.74 % |
| NotPassed |
83335616 |
65.86 % |
6333506816 |
69.64 % |
| |
|
|
|
|
| LowMAPQ |
34222704 |
27.05 % |
2600925504 |
28.60 % |
| MateUnmapped |
1937861 |
1.53 % |
147277436 |
1.62 % |
| Duplicate |
47813158 |
37.79 % |
3633800008 |
39.96 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
18262 |
0.01 % |
1387912 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1281488 |
1.01 % |
97393088 |
1.07 % |
| Unmapped |
1937861 |
1.53 % |
147277436 |
1.62 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2898493852 |
100% |
| Passed |
2396585373 |
82.68 % |
| Trimmed |
170119236 |
5.87 % |
| Clipped |
8589132 |
0.30 % |
| Overlapping |
276652896 |
9.54 % |
| LowQuality |
46547215 |
1.61 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |