/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011978_1894920_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011978_1894920_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 29136074 | 100.00 % | 14568037 | 100.00 % | 14568037 | 100.00 % |
| General Reads | 4584466 | 15.73 % | 2306493 | 15.83 % | 2277973 | 15.64 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 30 | 0.00 % | 15 | 0.00 % | 15 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 24551578 | 84.27 % | 12261529 | 84.17 % | 12290049 | 84.36 % |
| Bisulfite_reads C2T | 2370580 | 8.14 % | 1192172 | 8.18 % | 1178408 | 8.09 % |
| Bisulfite_reads G2A | 2213916 | 7.60 % | 1114336 | 7.65 % | 1099580 | 7.55 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 1713157 |
| Average Unique | 11.76 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 684625413 | 30.52 % | 248860590 | 22.19 % | 435764823 | 38.85 % |
| Base Counts Overall C | 417076007 | 18.59 % | 108947696 | 9.71 % | 308128311 | 27.47 % |
| Base Counts Overall G | 433889425 | 19.34 % | 317033739 | 28.26 % | 116855686 | 10.42 % |
| Base Counts Overall T | 678270892 | 30.23 % | 432190822 | 38.53 % | 246080070 | 21.94 % |
| Base Counts Overall N | 29615961 | 1.32 % | 14706002 | 1.31 % | 14909959 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 2106923 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 14568037 |
| 76 | 14568037 |
Insert Size Plot
| Insert Size Histogram |
 |