/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011979_1894921_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011979_1894921_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 23451740 | 100.00 % | 11725870 | 100.00 % | 11725870 | 100.00 % |
| General Reads | 4420738 | 18.85 % | 2227054 | 18.99 % | 2193684 | 18.71 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 67 | 0.00 % | 32 | 0.00 % | 35 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 19030935 | 81.15 % | 9498784 | 81.01 % | 9532151 | 81.29 % |
| Bisulfite_reads C2T | 2281753 | 9.73 % | 1148987 | 9.80 % | 1132766 | 9.66 % |
| Bisulfite_reads G2A | 2139052 | 9.12 % | 1078099 | 9.19 % | 1060953 | 9.05 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 1659116 |
| Average Unique | 14.15 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 539477951 | 29.87 % | 207541247 | 22.99 % | 331936704 | 36.76 % |
| Base Counts Overall C | 347591997 | 19.25 % | 107220146 | 11.88 % | 240371851 | 26.62 % |
| Base Counts Overall G | 362512209 | 20.08 % | 248141880 | 27.48 % | 114370329 | 12.67 % |
| Base Counts Overall T | 532363970 | 29.48 % | 328150983 | 36.34 % | 204212987 | 22.62 % |
| Base Counts Overall N | 23837853 | 1.32 % | 11837734 | 1.31 % | 12000119 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 2042458 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 11725870 |
| 76 | 11725870 |
Insert Size Plot
| Insert Size Histogram |
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