/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011981_1894923_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011981_1894923_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 21162488 | 100.00 % | 10581244 | 100.00 % | 10581244 | 100.00 % |
| General Reads | 1769776 | 8.36 % | 890588 | 8.42 % | 879188 | 8.31 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 10 | 0.00 % | 5 | 0.00 % | 5 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 19392702 | 91.64 % | 9690651 | 91.58 % | 9702051 | 91.69 % |
| Bisulfite_reads C2T | 916798 | 4.33 % | 461122 | 4.36 % | 455676 | 4.31 % |
| Bisulfite_reads G2A | 852988 | 4.03 % | 429471 | 4.06 % | 423517 | 4.00 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 658890 |
| Average Unique | 6.23 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 509328982 | 31.26 % | 174375183 | 21.40 % | 334953799 | 41.11 % |
| Base Counts Overall C | 291440255 | 17.89 % | 58947170 | 7.23 % | 232493085 | 28.54 % |
| Base Counts Overall G | 303300133 | 18.61 % | 239187819 | 29.36 % | 64112314 | 7.87 % |
| Base Counts Overall T | 503903421 | 30.92 % | 331558766 | 40.69 % | 172344655 | 21.15 % |
| Base Counts Overall N | 21538785 | 1.32 % | 10686850 | 1.31 % | 10851935 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 815065 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 10581244 |
| 76 | 10581244 |
Insert Size Plot
| Insert Size Histogram |
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