/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011983_1894925_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011983_1894925_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 26163524 | 100.00 % | 13081762 | 100.00 % | 13081762 | 100.00 % |
| General Reads | 2779206 | 10.62 % | 1397267 | 10.68 % | 1381939 | 10.56 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 23384318 | 89.38 % | 11684495 | 89.32 % | 11699823 | 89.44 % |
| Bisulfite_reads C2T | 1437668 | 5.49 % | 722543 | 5.52 % | 715125 | 5.47 % |
| Bisulfite_reads G2A | 1341538 | 5.13 % | 674724 | 5.16 % | 666814 | 5.10 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 1038407 |
| Average Unique | 7.94 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 628190969 | 31.18 % | 217509867 | 21.59 % | 410681102 | 40.77 % |
| Base Counts Overall C | 361313115 | 17.93 % | 75693919 | 7.51 % | 285619196 | 28.36 % |
| Base Counts Overall G | 375657376 | 18.65 % | 293624639 | 29.15 % | 82032737 | 8.14 % |
| Base Counts Overall T | 622859711 | 30.92 % | 407268729 | 40.43 % | 215590982 | 21.40 % |
| Base Counts Overall N | 26570177 | 1.32 % | 13198520 | 1.31 % | 13371657 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1270295 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 13081762 |
| 76 | 13081762 |
Insert Size Plot
| Insert Size Histogram |
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