/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011986_1894928_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011986_1894928_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 28690302 | 100.00 % | 14345151 | 100.00 % | 14345151 | 100.00 % |
| General Reads | 2535256 | 8.84 % | 1274001 | 8.88 % | 1261255 | 8.79 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 18 | 0.00 % | 9 | 0.00 % | 9 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 26155028 | 91.16 % | 13071141 | 91.12 % | 13083887 | 91.21 % |
| Bisulfite_reads C2T | 1311235 | 4.57 % | 658503 | 4.59 % | 652732 | 4.55 % |
| Bisulfite_reads G2A | 1224039 | 4.27 % | 615507 | 4.29 % | 608532 | 4.24 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 943963 |
| Average Unique | 6.58 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 700398401 | 31.70 % | 234203382 | 21.20 % | 466195019 | 42.21 % |
| Base Counts Overall C | 384983396 | 17.43 % | 66717317 | 6.04 % | 318266079 | 28.81 % |
| Base Counts Overall G | 400487581 | 18.13 % | 326735304 | 29.58 % | 73752277 | 6.68 % |
| Base Counts Overall T | 694136642 | 31.42 % | 462443426 | 41.87 % | 231693216 | 20.98 % |
| Base Counts Overall N | 29147234 | 1.32 % | 14477198 | 1.31 % | 14670036 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1162374 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 14345151 |
| 76 | 14345151 |
Insert Size Plot
| Insert Size Histogram |
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