/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011987_1894929_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011987_1894929_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 24348566 | 100.00 % | 12174283 | 100.00 % | 12174283 | 100.00 % |
| General Reads | 2751220 | 11.30 % | 1383266 | 11.36 % | 1367954 | 11.24 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 21597346 | 88.70 % | 10791017 | 88.64 % | 10806329 | 88.76 % |
| Bisulfite_reads C2T | 1418318 | 5.83 % | 712848 | 5.86 % | 705470 | 5.79 % |
| Bisulfite_reads G2A | 1332902 | 5.47 % | 670418 | 5.51 % | 662484 | 5.44 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 1042127 |
| Average Unique | 8.56 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 588009285 | 31.36 % | 200844490 | 21.43 % | 387164795 | 41.30 % |
| Base Counts Overall C | 334009666 | 17.82 % | 66246102 | 7.07 % | 267763564 | 28.56 % |
| Base Counts Overall G | 344062640 | 18.35 % | 272621102 | 29.08 % | 71441538 | 7.62 % |
| Base Counts Overall T | 584000887 | 31.15 % | 385417092 | 41.11 % | 198583795 | 21.18 % |
| Base Counts Overall N | 24757104 | 1.32 % | 12291005 | 1.31 % | 12466099 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1276907 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 12174283 |
| 76 | 12174283 |
Insert Size Plot
| Insert Size Histogram |
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