/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011988_1894930_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011988_1894930_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 33460256 | 100.00 % | 16730128 | 100.00 % | 16730128 | 100.00 % |
| General Reads | 4129011 | 12.34 % | 2074940 | 12.40 % | 2054071 | 12.28 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 12 | 0.00 % | 6 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 29331233 | 87.66 % | 14655182 | 87.60 % | 14676051 | 87.72 % |
| Bisulfite_reads C2T | 2127795 | 6.36 % | 1068920 | 6.39 % | 1058875 | 6.33 % |
| Bisulfite_reads G2A | 2001228 | 5.98 % | 1006026 | 6.01 % | 995202 | 5.95 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 1596812 |
| Average Unique | 9.54 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 828167387 | 32.14 % | 276869363 | 21.49 % | 551298024 | 42.80 % |
| Base Counts Overall C | 436882040 | 16.96 % | 72591431 | 5.64 % | 364290609 | 28.28 % |
| Base Counts Overall G | 454150989 | 17.63 % | 373729307 | 29.01 % | 80421682 | 6.24 % |
| Base Counts Overall T | 823242834 | 31.95 % | 548145734 | 42.55 % | 275097100 | 21.35 % |
| Base Counts Overall N | 33996462 | 1.32 % | 16884021 | 1.31 % | 17112441 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1934521 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 16730128 |
| 76 | 16730128 |
Insert Size Plot
| Insert Size Histogram |
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