/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011989_1894931_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011989_1894931_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 39018648 | 100.00 % | 19509324 | 100.00 % | 19509324 | 100.00 % |
| General Reads | 9723096 | 24.92 % | 4911688 | 25.18 % | 4811408 | 24.66 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 11 | 0.00 % | 5 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 29295541 | 75.08 % | 14597631 | 74.82 % | 14697910 | 75.34 % |
| Bisulfite_reads C2T | 5029716 | 12.89 % | 2539328 | 13.02 % | 2490388 | 12.77 % |
| Bisulfite_reads G2A | 4693391 | 12.03 % | 2372365 | 12.16 % | 2321026 | 11.90 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3738995 |
| Average Unique | 19.17 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 935748842 | 31.15 % | 342253305 | 22.78 % | 593495537 | 39.51 % |
| Base Counts Overall C | 539244097 | 17.95 % | 133472074 | 8.89 % | 405772023 | 27.01 % |
| Base Counts Overall G | 559675850 | 18.63 % | 416495600 | 27.73 % | 143180250 | 9.53 % |
| Base Counts Overall T | 930122213 | 30.96 % | 590307887 | 39.30 % | 339814326 | 22.62 % |
| Base Counts Overall N | 39644894 | 1.32 % | 19689082 | 1.31 % | 19955812 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4612107 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 19509324 |
| 76 | 19509324 |
Insert Size Plot
| Insert Size Histogram |
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