/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011990_1894932_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011990_1894932_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 30907352 | 100.00 % | 15453676 | 100.00 % | 15453676 | 100.00 % |
| General Reads | 15192551 | 49.16 % | 7729966 | 50.02 % | 7462585 | 48.29 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 5 | 0.00 % | 3 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 15714796 | 50.84 % | 7723707 | 49.98 % | 7991089 | 51.71 % |
| Bisulfite_reads C2T | 7839863 | 25.37 % | 3985787 | 25.79 % | 3854076 | 24.94 % |
| Bisulfite_reads G2A | 7352693 | 23.79 % | 3744182 | 24.23 % | 3608511 | 23.35 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5928394 |
| Average Unique | 38.36 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 713963271 | 30.00 % | 303579843 | 25.51 % | 410383428 | 34.49 % |
| Base Counts Overall C | 454515648 | 19.10 % | 162032496 | 13.62 % | 292483152 | 24.58 % |
| Base Counts Overall G | 467866416 | 19.66 % | 298425424 | 25.08 % | 169440992 | 14.24 % |
| Base Counts Overall T | 712083545 | 29.92 % | 410289900 | 34.48 % | 301793645 | 25.36 % |
| Base Counts Overall N | 31437224 | 1.32 % | 15605389 | 1.31 % | 15831835 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 7261375 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 15453676 |
| 76 | 15453676 |
Insert Size Plot
| Insert Size Histogram |
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