/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011991_1894933_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011991_1894933_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 31407254 | 100.00 % | 15703627 | 100.00 % | 15703627 | 100.00 % |
| General Reads | 2560695 | 8.15 % | 1288194 | 8.20 % | 1272501 | 8.10 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 22 | 0.00 % | 12 | 0.00 % | 10 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 28846537 | 91.85 % | 14415421 | 91.80 % | 14431116 | 91.90 % |
| Bisulfite_reads C2T | 1324126 | 4.22 % | 665669 | 4.24 % | 658457 | 4.19 % |
| Bisulfite_reads G2A | 1236591 | 3.94 % | 622537 | 3.96 % | 614054 | 3.91 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 943516 |
| Average Unique | 6.01 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 772752366 | 31.95 % | 257947092 | 21.33 % | 514805274 | 42.57 % |
| Base Counts Overall C | 415277993 | 17.17 % | 68854870 | 5.69 % | 346423123 | 28.65 % |
| Base Counts Overall G | 434636783 | 17.97 % | 357490807 | 29.56 % | 77145976 | 6.38 % |
| Base Counts Overall T | 763767493 | 31.58 % | 509035206 | 42.10 % | 254732287 | 21.07 % |
| Base Counts Overall N | 31923923 | 1.32 % | 15851304 | 1.31 % | 16072619 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1170879 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 15703627 |
| 76 | 15703627 |
Insert Size Plot
| Insert Size Histogram |
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