/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011992_1894934_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011992_1894934_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 24285668 | 100.00 % | 12142834 | 100.00 % | 12142834 | 100.00 % |
| General Reads | 3119529 | 12.85 % | 1570324 | 12.93 % | 1549205 | 12.76 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 21166139 | 87.15 % | 10572510 | 87.07 % | 10593629 | 87.24 % |
| Bisulfite_reads C2T | 1613894 | 6.65 % | 812197 | 6.69 % | 801697 | 6.60 % |
| Bisulfite_reads G2A | 1505635 | 6.20 % | 758127 | 6.24 % | 747508 | 6.16 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 1178669 |
| Average Unique | 9.71 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 558735225 | 29.88 % | 207329207 | 22.17 % | 351406018 | 37.58 % |
| Base Counts Overall C | 359132745 | 19.20 % | 104064622 | 11.13 % | 255068123 | 27.28 % |
| Base Counts Overall G | 369880222 | 19.78 % | 260638408 | 27.88 % | 109241814 | 11.68 % |
| Base Counts Overall T | 557549677 | 29.82 % | 350705890 | 37.51 % | 206843787 | 22.12 % |
| Base Counts Overall N | 24698567 | 1.32 % | 12260091 | 1.31 % | 12438476 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1451971 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 12142834 |
| 76 | 12142834 |
Insert Size Plot
| Insert Size Histogram |
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