/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011993_1894935_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011993_1894935_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 32540486 | 100.00 % | 16270243 | 100.00 % | 16270243 | 100.00 % |
| General Reads | 3398628 | 10.44 % | 1707362 | 10.49 % | 1691266 | 10.39 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 8 | 0.00 % | 5 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 29141850 | 89.56 % | 14562876 | 89.51 % | 14578974 | 89.61 % |
| Bisulfite_reads C2T | 1761121 | 5.41 % | 884267 | 5.43 % | 876854 | 5.39 % |
| Bisulfite_reads G2A | 1637515 | 5.03 % | 823100 | 5.06 % | 814415 | 5.01 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 1244081 |
| Average Unique | 7.65 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 782198273 | 31.22 % | 270662818 | 21.60 % | 511535455 | 40.83 % |
| Base Counts Overall C | 448229682 | 17.89 % | 97121458 | 7.75 % | 351108224 | 28.03 % |
| Base Counts Overall G | 465441970 | 18.58 % | 359874833 | 28.73 % | 105567137 | 8.43 % |
| Base Counts Overall T | 776690292 | 31.00 % | 508729919 | 40.61 % | 267960373 | 21.39 % |
| Base Counts Overall N | 33057205 | 1.32 % | 16419683 | 1.31 % | 16637522 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1540591 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 16270243 |
| 76 | 16270243 |
Insert Size Plot
| Insert Size Histogram |
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