/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011994_1894936_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011994_1894936_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 26148318 | 100.00 % | 13074159 | 100.00 % | 13074159 | 100.00 % |
| General Reads | 2273302 | 8.69 % | 1144746 | 8.76 % | 1128556 | 8.63 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 23875010 | 91.31 % | 11929410 | 91.24 % | 11945600 | 91.37 % |
| Bisulfite_reads C2T | 1177986 | 4.51 % | 592854 | 4.53 % | 585132 | 4.48 % |
| Bisulfite_reads G2A | 1095322 | 4.19 % | 551895 | 4.22 % | 543427 | 4.16 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 834691 |
| Average Unique | 6.38 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 633980835 | 31.49 % | 214769497 | 21.33 % | 419211338 | 41.64 % |
| Base Counts Overall C | 354770992 | 17.62 % | 66660249 | 6.62 % | 288110743 | 28.62 % |
| Base Counts Overall G | 370960692 | 18.42 % | 297122285 | 29.51 % | 73838407 | 7.33 % |
| Base Counts Overall T | 627127483 | 31.15 % | 414960429 | 41.22 % | 212167054 | 21.08 % |
| Base Counts Overall N | 26580484 | 1.32 % | 13197783 | 1.31 % | 13382701 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1037516 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 13074159 |
| 76 | 13074159 |
Insert Size Plot
| Insert Size Histogram |
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