/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011995_1894937_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011995_1894937_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 27361398 | 100.00 % | 13680699 | 100.00 % | 13680699 | 100.00 % |
| General Reads | 2581629 | 9.44 % | 1301830 | 9.52 % | 1279799 | 9.35 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 24779765 | 90.56 % | 12378867 | 90.48 % | 12400898 | 90.65 % |
| Bisulfite_reads C2T | 1336907 | 4.89 % | 673899 | 4.93 % | 663008 | 4.85 % |
| Bisulfite_reads G2A | 1244726 | 4.55 % | 627933 | 4.59 % | 616793 | 4.51 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 963884 |
| Average Unique | 7.05 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 669360716 | 31.77 % | 221513705 | 21.03 % | 447847011 | 42.51 % |
| Base Counts Overall C | 365466918 | 17.35 % | 61623561 | 5.85 % | 303843357 | 28.84 % |
| Base Counts Overall G | 381526071 | 18.11 % | 312822536 | 29.70 % | 68703535 | 6.52 % |
| Base Counts Overall T | 662666158 | 31.45 % | 443646752 | 42.12 % | 219019406 | 20.79 % |
| Base Counts Overall N | 27807783 | 1.32 % | 13807269 | 1.31 % | 14000514 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 1191583 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 13680699 |
| 76 | 13680699 |
Insert Size Plot
| Insert Size Histogram |
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