/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011997_1894939_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011997_1894939_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 55936170 | 100.00 % | 27968085 | 100.00 % | 27968085 | 100.00 % |
| General Reads | 36357022 | 65.00 % | 18241293 | 65.22 % | 18115729 | 64.77 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 19579148 | 35.00 % | 9726792 | 34.78 % | 9852356 | 35.23 % |
| Bisulfite_reads C2T | 18765368 | 33.55 % | 9412587 | 33.65 % | 9352781 | 33.44 % |
| Bisulfite_reads G2A | 17591654 | 31.45 % | 8828706 | 31.57 % | 8762948 | 31.33 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 13811845 |
| Average Unique | 49.38 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1443926045 | 33.52 % | 535442520 | 24.86 % | 908483525 | 42.19 % |
| Base Counts Overall C | 682223891 | 15.84 % | 105217189 | 4.89 % | 577006702 | 26.79 % |
| Base Counts Overall G | 704648331 | 16.36 % | 587075076 | 27.26 % | 117573255 | 5.46 % |
| Base Counts Overall T | 1419744621 | 32.96 % | 897510628 | 41.68 % | 522233993 | 24.25 % |
| Base Counts Overall N | 56542202 | 1.31 % | 28297132 | 1.31 % | 28245070 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 16986308 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 27968085 |
| 76 | 27968085 |
Insert Size Plot
| Insert Size Histogram |
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