/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs

BACK

SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	649589414	100.00 %	324794707	100.00 %	324794707	100.00 %
General Reads	156829401	24.14 %	78933918	24.30 %	77895483	23.98 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	282	0.00 %	143	0.00 %	139	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	492759731	75.86 %	245860646	75.70 %	246899085	76.02 %
Bisulfite_reads C2T	81018376	12.47 %	40761405	12.55 %	40256971	12.39 %
Bisulfite_reads G2A	75811307	11.67 %	38172656	11.75 %	37638651	11.59 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	59603600
Average Unique	18.35 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	15780918467	31.55 %	5658082050	22.62 %	10122836417	40.48 %
Base Counts Overall C	8802585321	17.60 %	1945789535	7.78 %	6856795786	27.42 %
Base Counts Overall G	9129179132	18.25 %	7026157138	28.09 %	2103021994	8.41 %
Base Counts Overall T	15646051680	31.28 %	10051170582	40.19 %	5594881098	22.37 %
Base Counts Overall N	659650278	1.32 %	327993134	1.31 %	331657144	1.33 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.4244233744514736
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	73323059

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011993_1894935_2
EXTERNAL-K011994_1894936_2
EXTERNAL-K011983_1894925_2
EXTERNAL-K011979_1894921_2
EXTERNAL-K011978_1894920_2
EXTERNAL-K011992_1894934_2
EXTERNAL-K011986_1894928_2
EXTERNAL-K011997_1894939_2
EXTERNAL-K011982_1894924_2
EXTERNAL-K011995_1894937_2
EXTERNAL-K011989_1894931_2
EXTERNAL-K011977_1894919_2
EXTERNAL-K011990_1894932_2
EXTERNAL-K011991_1894933_2
EXTERNAL-K011987_1894929_2
EXTERNAL-K011996_1894938_2
EXTERNAL-K011981_1894923_2
EXTERNAL-K011973_1894915_2
EXTERNAL-K011984_1894926_2
EXTERNAL-K011980_1894922_2
EXTERNAL-K011988_1894930_2
EXTERNAL-K011985_1894927_2