/EXTERNAL BLUEPRINT/K011972_K011976_K012000_K012001_4_lane_gembs

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SAMPLE K011972_K011976_K012000_K012001_4_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 185933394 100.00 % 92966697 100.00 % 92966697 100.00 %
General Reads 141493980 76.10 % 71306103 76.70 % 70187877 75.50 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 21 0.00 % 10 0.00 % 11 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 44439393 23.90 % 21660584 23.30 % 22778809 24.50 %
Bisulfite_reads C2T 73018304 39.27 % 36784187 39.57 % 36234117 38.98 %
Bisulfite_reads G2A 68475697 36.83 % 34521926 37.13 % 33953771 36.52 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 53175951
Average Unique 57.20 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 4819728673 33.66 % 1929668166 26.96 % 2890060507 40.37 %
Base Counts Overall C 2239340661 15.64 % 520661782 7.27 % 1718678879 24.01 %
Base Counts Overall G 2307389380 16.12 % 1747911831 24.42 % 559477549 7.82 %
Base Counts Overall T 4762033410 33.26 % 2866577683 40.04 % 1895455727 26.48 %
Base Counts Overall N 188379214 1.32 % 93616207 1.31 % 94763007 1.32 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 65553789



Mapping Quality

Mapping Quality Histogram
K011972_K011976_K012000_K012001_4_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011972_K011976_K012000_K012001_4_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012000_1894942_2
EXTERNAL-K011976_1894918_2
EXTERNAL-K011972_1894914_2
EXTERNAL-K012001_1894943_2